PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007924-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 467aa    MW: 50446.2 Da    PI: 8.0779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007924-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12395440655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L+el+P+     +k  + a++L + veYIk+Lq
  NNU_007924-RA 395 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLSVEYIKDLQ 440
                    689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.729389439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15392450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-12393444No hitNo description
Gene3DG3DSA:4.10.280.106.9E-15394450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12395445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-9395440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MMFGGSQALP KDMNLLFPSS FKYPEELQSR SREAMDSDLH LQQQQQQQRQ QLSSGLMRYR  60
SAPSSFFANF IDGSGSGVEE GCEGFLHHRP SSPEAESMFA RFMSSGRGGG GGSGGEPALP  120
DPREIGERPS AVAPSCAAVN QRNSQFMAPM EREGEVVSQQ NGYPSDSQMM YQSQTPPPVP  180
NHSSAPTAPT VDNSYRVVNS MTIDRPPQVK SDGGPSNLIR HSSSPAGLFA NLTVENGFAV  240
MGGMGNFRAG NGCNGETSPA TGRLKGQISF SSGTHSSSGP MPQIAEEGIG GSSSDDGSFG  300
NSNAGNRGYI PGFPIGSWDD SALVSENLTG LKRLRDINGG NQNGEAVHRP PMLAHHFSLP  360
KTSTEMAALE KFLQFQDSVP CKVRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD  420
KQTNTADMLD LSVEYIKDLQ KQVKTLTDKR ANCTCSSKQK PYTNPTV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257364.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA5B8901e-141A5B890_VITVI; Putative uncharacterized protein
STRINGVIT_06s0004g01740.t011e-119(Vitis vinifera)
STRINGPOPTR_0009s06910.11e-118(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-71bHLH family protein